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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatcccataatttttctaaaaaacttgacgccttgtttcttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA

Basic information

species Arabidopsis thaliana
transcript AT3G06670.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 11
---gttggatcccataatttttctaaaaaacttgacgccttgtttcttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA
         | | |    ||||||     |||  |    ||  |  ||||  | |   ||  || ||||||  | ||  |||  ||||||||||||||||||||||| | ||||| |||| |||||||||  | || ||  |||| ||||| ||||||||||| 
gtttcctccttctaagccttttcttgtttactctatttatt--tatttgtaatct---gttccttaccttcatttactgtttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT

upper sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 10
gttggatcccataatttttctaaaaaacttgacgccttgttt-cttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA
|||   |||    |    | |       |   |   || |||  ||||| |||   ||  || | |||| || |    ||  ||||||||||||||||||||||| | ||||| |||| |||||||||  | || ||  |||| ||||| ||||||||||| 
gtttcctccttctaagcctttccttgtttactctatttatttatttgtgattt---gttccttatcttcagttattgcttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacgccttgtttcttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA
                             ctctcac  putative branch site (score: 3)
                            tctctcaccttctgtc  CT-rich tract
                                               ttttaca  TA-rich tract