1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttgttcgtgaaaactcttagattcaatattcagttccactgattgatctcatctactaaaacatgcatgtttatactcaaaatttatgtaaaatgtgcagATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCTGCAGGTGCTGGTGCGGAGGAAGACTAAGCCGGAGAACAAATACCTCGTA
species | Arabidopsis thaliana |
transcript | AT3G03960.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAG ATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCTEST: gi|47828029|gb|CK117713.1|CK117713
genomic: CCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAGgtatgcacaa ... aaatgtgcagATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCT
EST: CCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAG ATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCT
genomic: CCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGTGTAGACCAGgtatgcacaa ... aaatgtgcagATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCT
atctcatctactaaaacatgcatgtttatactcaaaatttatgtaaaatgtgcagATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCTGCAGGTGCTGGTGCGGAGGAAGACTAAGCCGGAGAACAAATACCTCGTA
tactaaa putative branch site (score: 1)
atgtttatactcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcgtgaaaactcttagattcaatattcagttccactgattgatctcatctactaaaacatgcatgtttatactcaaaatttatgtaaaatgtgcagATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCTGCAGGTGCTGGTGCGGAGGAAGACTAAGCCGGAGAACAAATACCTCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - gaaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa