Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctctctttctgtatttttcaagttataggataaattcacggatttccctttgaaagttagctgcaaggtgatcttggatttgcgggaaaaaaggattagggaagagttctcactgacaactctctgtatgaatctttgcagGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAGCTTGCTTCTGTGCTATCCATAATCATGGTTTTGAGGTGCTATTTTCCTT

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G48060.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G16900.1 (Glycine max), 3'ss of exon 5
gtacgcctctctttctgtatttttcaagttataggataaattcacggatttccctttgaaagttagctgcaaggtgatcttggatttgcgggaaaaaaggattagggaagagttctcactgacaactctctgtatgaatctttgcagGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAGCTTGCTTCTGTGCTATCCATAATCATGGTTTTGAGGTGCTATTTTCCTT
         | ||  || |||||   |||||    |||  ||     |||         || |      | |  || | |   | ||     |  | | |   | || ||| |  |              | |||||||  |||||||||||| ||     || ||  | ||||| ||||||||  |||| ||||| |||||||||||||| || ||||| |||||||||||| || ||||||| ||
--------gtattgatggatttt---agttagtttatactttttgaaattatatc----aattccatatccatatgctttcccacttattaaatgacaaggacatgggagattcatg------------ttctatgaattgttgcagGTCTCCGTAAAGAAGATAGTGCCTGGGATTTCTTGGAAGTAGCTTTGCTTGCTTGCTTCTGTGCAATTCATAACCATGGTTTTGAGATGTTATTTTCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402575|gb|EG445167.1|EG445167
EST:     CTCCTTAAAGCAGGAAGGCTCTGCGAGCAGAGAAGTTCTATTTCAGTTAG                         GTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAG
genomic: CTCCTTAAAGCAGGAAGGCTCTGCGAGCAGAGAAGTTCTATTTCAGTTAGgtacgcctct ... atctttgcagGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaggattagggaagagttctcactgacaactctctgtatgaatctttgcagGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAGCTTGCTTCTGTGCTATCCATAATCATGGTTTTGAGGTGCTATTTTCCTT
                        cactgac  putative branch site (score: 2)
                                              tctttgc  putative PPT
                                        tatgaat  TA-rich tract