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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttcttaacaaaactcggtacttgtaaagattctattgtttgaaaaactgataacttggagattgatgttttgttggttatgaatttagTATGATCTTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTATGAGAACTGCACGGATCCATCCGTCACTTACTT

Basic information

species Arabidopsis thaliana
transcript AT2G45270.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083817|gb|DR379576.1|DR379576
EST:     TAGGAAGATATGATCCWCCTCCWCCTGCAACTGAMCCTGAGGATTATGTG                         TATGATCTTCGACCGAGGTASCCTCTTGGCGAGGAGTATGCGAAAGGAAGA
genomic: TAGGAAGATATGATCCACCTCCACCTGCAACTGAACCTGAGGATTATGTGgtactttttc ... atgaatttagTATGATCTTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttgaaaaactgataacttggagattgatgttttgttggttatgaatttagTATGATCTTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTATGAGAACTGCACGGATCCATCCGTCACTTACTT
                                           ttatgaattta  TA-rich tract