Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgttattttgctatcttcctaacagttgttcaagagctggacttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G37500.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37500.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 11
-----------------------gtatgtatgttattttgctatcttc--ctaacagt-tgttcaagagctggacttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG
| | | || | | || ||| | | | ||| || | || | | | |||| | |||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| || |||
atcttattttcttcttggttgcagagtttttgatgtatttttatttacagcaaactgtacctataaaggaaaaagatgctgacctatttatctcctgtagGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGTCTAATTGAG

upper sequence: AT2G37500.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 11
---------------------gtatgt-atgttattttgctatcttcctaacagt---tgttcaagagctg-gacttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG
|| | | || | | | || ||| || ||| | || || | | | | ||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||| | |||
cctttagatcttcttccatggttacctcgagacatgtaatttattcttcaaaagtgcctggtcagaaaatgtgaagttttgagttgattgttctttccagGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGAGAAGGTGCAACATGCCTCGTTGAG

upper sequence: AT2G37500.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 12
---------------------gtatgtatgttattttgctatcttcctaacagttgttca-----agagctggacttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG
| |||| | | | | ||| | | | || || | | || | | | | ||| ||||| |||||||| ||||| |||||||||||||||||||| ||||| || ||||| ||| | |||
gtcatcctttattccaacctccttcagatgtaagcataatttattcttcaaaagtgcccagtcagaaaatgtgaagttttgagttgattgttctttccagGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAG

upper sequence: AT2G37500.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------gtatgtatgttattttgctatcttcc-taacagttgttcaagagctggac--ttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG
| | || || | |||| | | | ||| | |||| | || | | |||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| || ||||| || || |||
aagtcagttggctcatgaggtttagaggcttgaatttctactattatggacagcctttgggtccaatctggtcagttcttaacaaatgtccttttttcagGTAATGCAGGGTCTTGCAAAATCAATAGCATGGGATGGAGAAGGAGCAACATGCCTAATTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428311|gb|EG470903.1|EG470903
EST:     CATCTTTGAACTGTAAAGAAGCTGCACAGCTTCAGGCATGCCTCGATGCG                         GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACA
genomic: CATCTTTGAACTGTAAAGAAGCTGCACAGCTTCAGGCATGCCTCGATGCGgtatgtatgt ... tctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACA
EST: gi|116428312|gb|EG470904.1|EG470904
EST:     CATCTTTGAACTGTAAAGAAGCTGCACAGCTTCAGGCATGCCTCGATGCG                         GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACA
genomic: CATCTTTGAACTGTAAAGAAGCTGCACAGCTTCAGGCATGCCTCGATGCGgtatgtatgt ... tctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttcctaacagttgttcaagagctggacttaacatggagcccatctttttcagGTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG
                                         cccatctttttc  CT-rich tract
 atcttttt  TA-rich tract