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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttagaaatctcatatatttccccaatgtaaaaaagtcatatatattcaacaacaacacatgtttcctctttgcagCCCGACTCGTTAGGACCACTGGATTTAGACATTAGATCGTCAAAGTATACAGATGATTTGATCCTTAGTGAGAGCCTCGGGGGATTGAGCCGTCTGATAG

Basic information

species Arabidopsis thaliana
transcript AT2G36960.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087868|gb|DR383627.1|DR383627
EST:     CGATGGATTCTCCAGGGAAGACCCCTTGTGGACTTGCGGATGTATACTGG                         CCCGACTCGTTAGGACCACTGGATTTAGACATTAGAACGTCAAAGTATACA
genomic: CGATGGATTCTCCAGGGAAGACCCCTTGTGGACTTGCGGATGTATACTGGgtaaatttag ... ctctttgcagCCCGACTCGTTAGGACCACTGGATTTAGACATTAGATCGTCAAAGTATACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaatgtaaaaaagtcatatatattcaacaacaacacatgtttcctctttgcagCCCGACTCGTTAGGACCACTGGATTTAGACATTAGATCGTCAAAGTATACAGATGATTTGATCCTTAGTGAGAGCCTCGGGGGATTGAGCCGTCTGATAG
                                     catgtttcctcttt  CT-rich tract
       taaaaaagtcatatat  TA-rich tract