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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcagatatctcaaatcattataatactttgttcattaatattggatatacacatatttgattgatttgtgtgtgtatgtgtgtgcagACATATATGGACTCAGAGATAAGAGCTATAATGGCACAATACATGCCTCTTGATAATAATCCCAATACTCAACTTTCTTCTCAACTAGAGTTGTAA

Basic information

species Arabidopsis thaliana
transcript AT2G30290.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30290.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA03G00510.1 (Glycine max), 3'ss of exon 11
-----------gtaatcagatatctcaaatcattataatactttgttcattaatattggatatacacatatttgattgatttgt-gtgtgtatgtgtgtgcagACATATATGGACTCAGAGATAAGAGCTATAATGGCACAATACATGCCTCTTGATAATAATCCCAATACTCAACTTTCTTCTCAACTAGAGTTGTAA----
           |    | |||||   |  | ||||||  |   |     || ||  | || || |  | | | | || |||    | |  ||| | | |||||| |||||||||||| |||||||| || || ||||| |||||||||||  | |||||| | ||  | | |     |    ||||   ||   | ||     
tttgtctttttgccccctgatattatag-ttattatacaaaggtacaatttgatcattgacatcc-taaactcgtttaattaaaagagaatattt-tctgcagAGATATATGGACTCTGAGATAAGGGCAATTATGGCCCAATACATGCCATTGGATAATCAACCAGAGATTTCTAGTCAAGCTCATGAAGGTGTCTAGAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattaatattggatatacacatatttgattgatttgtgtgtgtatgtgtgtgcagACATATATGGACTCAGAGATAAGAGCTATAATGGCACAATACATGCCTCTTGATAATAATCCCAATACTCAACTTTCTTCTCAACTAGAGTTGTAA
                    atatttgattgattt  TA-rich tract