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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttattggggatgcaaatccatcctaattggtttcttagaaaatgctcaagaaatgcaactttttttttagtagttccagatgcacttatactgtgtctgaatgaatttgaatgtgtagTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGG

Basic information

species Arabidopsis thaliana
transcript AT2G23380.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23380.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 3'ss of exon 12
---gtaagtcttattggggatgcaaatccatcctaattggtttcttagaaaatgctcaagaaatgcaactttttttttagtagttccagatgcacttatactgtgtctgaatgaatttgaatgtgtagTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGG
     || |   |||   | | |   ||   |||||||  | |   | |||  || ||  | ||  ||||| | ||||            |  || | ||||             ||  | |||| ||  | || |||||| |  | || ||||| | ||||||||| ||||||||||| ||| |||| |||||| |||| || ||||| |||||||||
tattcaatttcaattactgtttct--tcatccctaatttttctagaacaaagcgc-cagtacattgaacttctatttt------------tctacctgtact-------------ttctattgtgcagGTGCGGTGATGGTACATTGGGAGTCCCTAACCAAAGAGGTGATAATTATGAATGCCGGAACATGAAACTGCTGCTTAAACAGCAACAAAGG

upper sequence: AT2G23380.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G157820_T02 (Zea mays), 3'ss of exon 12
gtaagtcttattggggatgcaaatccatcctaattggtttcttagaaaatgctcaagaaatgcaactttttttttagtagttc-cagatgcactta--tactgtgtctgaatgaatttgaatgtgtagTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGG
                               || |  |||  ||||    | | ||   || ||  ||||| |  | ||  ||     | |||| |  |||  |      ||   ||| ||  || ||  |||| |||||| |  | || || |||| ||| ||||| ||||||||||| ||| |||| |||||| |||| || |||||||||||||||
-------------------------agcttgaactaattttctagagctggtttaa---atccatttttttctagaataaatcatcagtacactgaactacaatccacttatatttttcaacttgcagGTGTGGTGATGGTACATTGGGAGTTCCAAACCAGAGAGGAGATAATTATGAATGCCGGAACATGAAACTGCTTCTTAAACAACAACAAAGG

upper sequence: AT2G23380.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtcttattggggatgcaaatccatcctaattggtttcttagaaaatgctcaagaaatgcaactttttttttagtagttccagatgcacttatactgtgtctgaatgaatttgaatgtgtagTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGG
                       ||||| ||  | | | ||||    ||   |       ||| ||| |  ||||   | |     |    ||   |      |||  |||| | |  | || ||| |||| |||||| | ||||| || |||||||||||||| ||||||||||| || || ||||||||  | || || ||||| |||||||||
-----------------------tccattctc-tcgctctctttctcaactatatgttgttgctactctgattttctcactgtacaaatttctaccatctgagctgcttgaactggcgt-tgcagTTGTGGTGATGGTACTCTTGGTGTACCAAGCCAAAGAGGTGATAATTATGAATGTAGAAATATGAAGCTTCTTCTCAAACAGCAACAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagtagttccagatgcacttatactgtgtctgaatgaatttgaatgtgtagTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGG
                                    aatgaattt  TA-rich tract