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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagtaaaaaatggtttaaacattgaggagtcttgtattgttgttgtaatgtaaattgcttattcaagaacagcttgtgtttcttccttcagGCTCCTGTAAACTATGTGTGTTTGCATTGTGTGAAACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGATGTTC

Basic information

species Arabidopsis thaliana
transcript AT2G22730.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22730.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 3'ss of exon 11
gtaaagagtaaaaaatggtttaaacattgaggagtcttgtattg-ttgttgtaatgtaaat-tgcttattcaag-aacagcttgtgtttctt----ccttcagGCTCCTGTAAACTATGTGTGTTTGCATTGTGTGAAACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGATGTTC
 |||| |||         |   |||   ||||     | ||||| || || | ||    || ||| |||  ||  ||   ||| || || ||    | |  |||| || ||||||||||| ||  | |||||||| ||||||||||| || ||||||||||||||||| || || || ||||| || ||||| || ||||| |
-taaacagtgctggtcaatgggaacg--gagggagtatatattgatttttctcatcctgatatgcatatctaattaatttcttttgattgttgtaacttgtagGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgttgtaatgtaaattgcttattcaagaacagcttgtgtttcttccttcagGCTCCTGTAAACTATGTGTGTTTGCATTGTGTGAAACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGATGTTC
                                    cttgtgtttcttcctt  CT-rich tract
      ttgtaatgtaaatt  TA-rich tract