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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaagcataaccatcctctgttataaactcatctttagctttcgacaatattgctttgtgtataaaaagctctctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT

Basic information

species Arabidopsis thaliana
transcript AT2G19940.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA07G29630.1 (Glycine max), 3'ss of exon 13
gta-attaagcataaccatcctctgttata---aactcatctttagctttcgacaatattgc------tttgtgtataaaaagctctc----tggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
|||  |||||  |     |||||   ||||   | || |  ||  |  ||  |  |||||         ||||  | |  |   | |     || ||||||||||||||||||| ||||| |||||||| || ||||| || || || |||||  |  |  |||||| ||| ||||    ||| || |   ||| ||| ||||
gtatgttaagtttttttttcctcctatatatccagctgaaattgtgtatttaatgatattatgatactattgttgacatcactatgttgatgtgttgttgcagATTGATAATCTAGTGAAGGGAGCTTCAGGTCAAGCTTTACAAAACCTTAATTTGTTAATGGGATTTCCAGAAAATTTGGGACTTCATTACCTGCCTCTTT

upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv03s0063g01110.t01 (Vitis vinifera), 3'ss of exon 12
-------gtaattaagcataaccatcctctgttataaactcatcttt-----------agctttcgacaatattgctttgtgtataaaaagctct---ctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
         ||||     |   |||  | |   ||    |||| |||            | | |  | |||  | || |   |    || |           || |||||||||||||||||||||| |||||||| || ||||| ||||||||||||||  | ||| ||||||  || || |  || || || ||  |||||||  | |
gtatgtttaaatttcctttgttcatgttttagaattccttcatatttctagtatgaaaggttattaataatcctactatcactggctaaggtctcaaatccttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAATGTGATGATGGGATTGCCGGAGAATACAGGACTTCTCTACCAGCCATTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085468|gb|DR381227.1|DR381227
EST:     TGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGT
genomic: TGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGT
EST: gi|124826986|gb|EH911852.1|EH911852
EST:     GAAGAGCTATCATAATCTCAGT
genomic: GAAGAGCTATCATAATCTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttagctttcgacaatattgctttgtgtataaaaagctctctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
                                       ctctctg  CT-rich tract
                        tttgtgtataaaaa  TA-rich tract