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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctttcaacctccttttattaattagaattagattaaactcttgagtaatagtgtcgaaagttatggggatgatagatatggaggtaacatattcgttttggttggggggaaatttacagGTTTTTGTAGCAATGCTTGTAGACAACTTCCTATATCCGATATCAGCTTTCCGGTCTCATTTTTCTCAATCCATAAACTGGTCTGGAATCAGATACCACT

Basic information

species Arabidopsis thaliana
transcript AT2G19880.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 12
gtatgtgctttcaacctccttttattaattagaattagattaaactcttgagtaatagtgtcgaaagttatggggatgatagatatggaggtaacatattcgttttggttggggggaaatttacagGTTTTTGTAGCAATGCTTGTAGACAACTTCCTATATCCGATATCAGCTTTCCGGTCTCATTTTTCTCAATCCATAAACTGGTCTGGAATCAGATACCACT
          | |   ||| |||          | |   |||   | || ||| ||  ||       ||      || || ||| ||    ||||   || ||||||||||       | ||  |||| ||  ||||  || | ||||||||||| || || || ||||| || ||| ||||||||||||| ||||| || || |||||||| ||||| |||||| 
---------gtgagtttccctttcaacgcacctacttattta--ttatttagttatcttgctt----ttcctattatcat-gatttg----taac---tttgttttggttgaactttcaattttagGTCTTCATAGCTGTGTTGGTAGACAACTTTCTCTACCCTATATCTGCATTCAGGTCTCATTTTTCCCAATCAATCAATTGGTCTGGTATCAGGTACCACC

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 12
gtatgtgctttcaacctccttttattaattagaattagattaaactcttgag-taatagtgtcgaaagttatggggatgatagatatggaggtaacatattcgttttggttggggggaaatttacagGTTTTTGTAGCAATGCTTGTAGACAACTTCCTATATCCGATATCAGCTTTCCGGTCTCATTTTTCTCAATCCATAAACTGGTCTGGAATCAGATACCACT
                      ||| | |  ||||   ||   ||| |  || |||  ||||  ||  | |     | | | | |||  || |   | |    |      ||        |  |||||| ||  | |||||||| || || ||||| || |||||  |||| || ||||| ||||||||||||||||| || ||||||||||| ||  | ||| | |
----------------------tatgattatgaatgtaat---actatgaagctaagggtgtgaaatatca--aacaagcttgctattaagttggtaaaaagttagaaactgacttcttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCCGCTCTCATTTTTCTCAATCTATCAACTGGTCTGGTATTCGGTACTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggatgatagatatggaggtaacatattcgttttggttggggggaaatttacagGTTTTTGTAGCAATGCTTGTAGACAACTTCCTATATCCGATATCAGCTTTCCGGTCTCATTTTTCTCAATCCATAAACTGGTCTGGAATCAGATACCACT
                 aggtaac  putative branch site (score: 3)
                    taacatatt  TA-rich tract