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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtctgtgtgcctagataatatatactttctgtatctctgtgtccaacacatatttgccttagtcccctttgcttgaggttttaagtgaaaagtttactcatttctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC

Basic information

species Arabidopsis thaliana
transcript AT2G07050.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07050.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 3'ss of exon 13
gtattgtctgtgtgcctagataat-atatactttctgtatctctgtgtccaacacatatttgccttagtcccctttgcttgaggttttaagtgaaaagtttactcatttctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC
            |   |  | ||| ||||| |    | |    | ||    | |||| ||    ||| |   ||    ||  ||||  |||   ||       || |||    |  ||| ||||||| || || ||||| |||||||| |||||||||||||||||
------------tttttgtacaattatatattaaaagcaatgttatg---gatacatgttc-ttttaat---ctacagttttggttgaaagcataattccatttccttttctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124987964|gb|EL060381.1|EL060381
EST:     ATGGAGGCCTCGCAACATATGAGCTCACCAGGTCATACCCTTGGTTAGAG                         CTAATCAACCCAGCAGAAACCTTTGGCGATATTG
genomic: ATGGAGGCCTCGCAACATATGAGCTCACCAGGTCATACCCTTGGTTAGAGgtattgtctg ... ctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGATATTG
EST: gi|125240741|gb|EL254826.1|EL254826
EST:     CTCACCAGGTCATACCCTTGGTTAGAG                         CTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC
genomic: CTCACCAGGTCATACCCTTGGTTAGAGgtattgtctg ... ctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC
EST: gi|124911029|gb|EH985109.1|EH985109
EST:     ATGGAGGCCTCGCAACATATGAGCTCACCAGGTCATACCCTTGGTTAGAG                         CTAATCAACCCAGCAGAAACCTTTGGCGAT
genomic: ATGGAGGCCTCGCAACATATGAGCTCACCAGGTCATACCCTTGGTTAGAGgtattgtctg ... ctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtcccctttgcttgaggttttaagtgaaaagtttactcatttctgttggcagCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC
                                      ctcatttct  CT-rich tract
                             aaaagttta  TA-rich tract