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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcacaaatatttagcctcgtatacagatttaactttagtaatatgatttgttgcttagcgaaatctctcgattgcagAAATATCAGCCGTATGCAACAGATCCTAACCTAAGCGGGGCTTTAGCAACAGTGCTTTGGGAACTCAGTCTCTTGAGTAAACATTATCATCCTGCGATCT

Basic information

species Arabidopsis thaliana
transcript AT1G79150.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164065658|gb|ES002698.1|ES002698
EST:     ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCCGGTTCAATTGCA                         AAATATCAGCCGTATGCAACAGAT
genomic: ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCCGGTTCAATTGCAgtaagtcaca ... tcgattgcagAAATATCAGCCGTATGCAACAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatttaactttagtaatatgatttgttgcttagcgaaatctctcgattgcagAAATATCAGCCGTATGCAACAGATCCTAACCTAAGCGGGGCTTTAGCAACAGTGCTTTGGGAACTCAGTCTCTTGAGTAAACATTATCATCCTGCGATCT
    atttaac  putative branch site (score: 3)
                                         tctctc  putative PPT
     tttaactttagtaata  TA-rich tract