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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttcatttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA

Basic information

species Arabidopsis thaliana
transcript AT1G73860.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 3'ss of exon 11
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttcatttgatattttggattcttgc-agCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
    ||     |   | ||   ||    |  |   |  ||   || |||  || ||    | ||      |||||   |  | |  | |  ||   ||| ||    || ||        |||||||||    ||    |||| || || ||| || ||    || ||   ||| ||  |||| ||||| |||||||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||
----gtaagaataaaagcgacacttaagtgaaatttgttgtgctttagtgttgattatactaattgtccagagaaagtaccgaaattttgcagtgctaacatacagtttat--------gttcatttgtatattcattttctggctagATGAGGTATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 13
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttc-atttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                                                                   |       || |   |  |  ||  | | |||  |||| |   |   |  || ||| | |   ||| ||  | | || ||||||| || || || |||||   ||||||| || | ||||| |||||||| | |||||||||||| ||||| ||||| || || || ||||| ||||||||
------------------------------------------------------------------gtatatttttttacaatggaaatctggta-taagcttatctgtgtgcaaataaattctaatacttatctttcaat-ttacagCTGAGGTTTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G062034_T01 (Zea mays), 3'ss of exon 4
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattg-atatcaccaagttcatttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                       || || ||  | ||    |    |  | | |||||| | ||||||   |    |    ||||   ||   |||||  | |   ||  | ||          || |    || | | || ||  || |   || ||    || ||  | || ||  |||| ||||| |||||||| ||||||||||| || ||||||||||| || || |||||||| |||||  |
----------------------gtgcta-atgacattgaaataaaaatatatcttttgtttaatctatttaattgctataagtac---tcataaaatagcactgagttatacattttttgtcatatctttctttcttgtttgttatagATATGGTTTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G173700_T01 (Zea mays), 3'ss of exon 10
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttcatttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                                    |||| | ||   || |  |||    ||   ||     | || ||   |||| | |     || | ||||| |   ||   |   ||      ||  | |    | || ||||||| || ||||| ||||||  ||| ||| |  | ||||| || ||||| | ||| |||||||| ||||||||||||||||| || || || ||||||||
-----------------------------------gtatgttgttttcttttaatttaaaagaa--attgataatttaatatcacattttg-----tagtgttataatctgatattctgatt------attctctatgattttacagCTGAGGTTTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 9
----------gtgtgttcatctgttaccggttc-tgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttcatt-tgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
           | |  ||| |  || ||  |     ||  ||      |   ||||   || |  |       || |||          ||      |     | | |  | ||| | |  |||      ||| ||| | ||   |   | |  ||||||||| || | | | ||||||  | |  |  |  | ||||||||||||||||  ||||| ||||||||||| ||||||||||| || ||||||||||||||
gtttatttctatatactcaccatttgccattaggctttgaatggaaaaacattttttcattataatactacctatttatatagactccaatttcttgttatttggatt--ttttacactt-tattgttgtgttgattgttattactctaaatgatgcagCTGAGGTGTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 11
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagttcatttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                        ||| ||     |||   |||| |   | ||||        || |   ||   | ||| ||    ||      |||| || || | ||   |  || ||              || |  |||||| || || |  || |||||   | |  |  | || ||||| || |||||||| ||||| ||||||||||| |||||||| || || ||||||||||||||
------------------------gttttaaga--ttaatttttttaacacagtttctc----ccttttttagttgttatgttaaccttc------taatgttgtactaatgatattaaatt--------------gaataatgcagCGGAGGTATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTA

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA08G04580.1 (Glycine max), 3'ss of exon 5
gtgtgttcatctgttaccggttctgttatatatccttatgcttttcagttctgttttgtgtgatctatgcgagaattcatggtacatctcgagaaataatattatattgatatcaccaagtt-catt--tgatattt--tggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                                                       || |  |||  ||        |||  ||   || |     |   | |||| || | ||    | |||  | |  |||||||   | || |  |||||| || || |  || |||||   | |  |  | || ||||| || ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||
----------------------------------------------------aggttttaggattaattttttttatcacagtttctccctgattaagttgttatgttaacattctaatgttgtactaatgatattaaattgaataatgcagCGGAGGTATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaataatattatattgatatcaccaagttcatttgatattttggattcttgcagCTGACGTCTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTA
                                              ttcttgc  CT-rich tract
     aatattatattgatat  TA-rich tract