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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttttcttatacagatttatgtacatcttgtaatactttttctgatcttctgtggcaaactctttggttaccaagtctgaattttgaaatatagGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC

Basic information

species Arabidopsis thaliana
transcript AT1G73720.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 12
--gtatcttttcttatacagatttatgtacatcttgtaatactttttctgatcttctgt-ggcaaactctttggttacc---aagtctgaatt--ttgaaatat-agGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
  || ||||     ||  |   |||||    | |  || |   |||| |||| |  |    ||||| |  ||  ||  |   |  ||| | ||  ||| ||| | |||||  |||||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |
gtgtgtcttcgaaaatttactattatgggtttttgctattcaattttttgatgtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA08G13560.2 (Glycine max), 3'ss of exon 12
--gtatcttttcttatacagatttatgtacatcttgtaatactttttctgatcttctgt-ggcaaactc-tttggttaccaagtct--gaatt--ttgaaatat-agGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
  || ||||     ||  |   | |||    | |  || | | ||||||||| |  |    ||||| |  ||   || || | | |  || ||  ||| | | | |||||  |||||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |
gtgtgtcttcaaaaatttactatgatgggtttttgctattccattttctgatgtcatcccagcaaatttgttcattttcctaatttatgatttcgttggactgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------------------------------------------gtatcttttcttatacagatttatgta--catcttgtaatactttt----tctgatcttctgtggcaaactctttggttaccaagt-----ctgaattttgaaatat-agGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
                                                           | |||| |  ||     ||   || ||   |  ||| | | ||||     |||| ||| || |     | |  |||  ||   | |      |   ||||||| | | |||||  ||| ||||| || ||     ||||  | ||||||||||| ||||| || ||| ||||||| |||| ||||||||| |||||| |||||||||| |
gtacttcttttattttttatttttgatggatttaagggtacttcttttatttaaaaagtgcatctctctttggtttgagcaatataactaatttggattcctttgcatatctggtctgctttaatttatttcttgactaattactacctttttctttttgaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgatcttctgtggcaaactctttggttaccaagtctgaattttgaaatatagGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
 ttctgat  putative branch site (score: 3)
                                      tgaattttgaaatata  TA-rich tract