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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaaaaaaccctctgtgttttacagtttcatgttattcttgcagcaagctcatttttgtttgtctgtttgtttcagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTAC

Basic information

species Arabidopsis thaliana
transcript AT1G70580.4
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70580.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G04320.1 (Glycine max), 3'ss of exon 14
---------------------gtagaaaaaaaccctctgtgttttac-agtttcatgttattcttgcagcaagctcatttttgtttgtctgtttgtttcagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTAC
                      |     | ||  | |  | ||  ||  ||||  | ||| |  |     | | |  | | |||    ||  |  || ||||||||| ||||| |||||||| ||| | ||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||| || |||   || |||
acttcaagaactacaacatatatgatgtagaaagcac-atattccactggttttcttttactactttctaatgattgtgtatgtcaaacttatgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGATATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC

upper sequence: AT1G70580.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA01G03260.2 (Glycine max), 3'ss of exon 13
-------gtagaaaaaaaccctctgtgttttacagtttcatgttat----------tcttgcagcaagctcatttttgtttgtc---tgtttgttt-cagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTAC
         ||||  | | | | | || | || |     || ||            | || |  |  ||| ||  || | ||||     ||||  | |||||| || ||||| ||||| || ||| | ||||  || ||||| ||||| |  |||||||| ||||||||||||||||||||||| || |||   || |||
ataccttcaagaactacaacatatatgatgtagaaagaaatattgcactggttttcttttactacttgctaatgattctgtgtcaaacttttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGCTATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084463|gb|DR380222.1|DR380222
EST:     GCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAAAGAAGG                         GGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGA
genomic: GCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAAAGAAGGgtagaaaaaa ... tttgtttcagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtttcatgttattcttgcagcaagctcatttttgtttgtctgtttgtttcagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTAC
                                             tttgtttc  CT-rich tract
                              atttttgttt  TA-rich tract