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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaagagacacttgaagttcgttgtttgtcacgcaaaagacagagtttctaattatatcgtctgttatatgacgaatctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA

Basic information

species Arabidopsis thaliana
transcript AT1G67850.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 12
------------------------------gtaagaaaagagacacttgaagttcgttgtttgtcacgcaaaagacagagtttctaatta---tatcgtctgttatatgacg---aatctgaatatattttacaccga--aatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
                                 |     | |  || | ||| |       || ||   |||| | | |||    ||| |   |    ||||| | ||   |   ||  | ||  |||| | |        ||  ||||||||||||||||||| ||||| ||||||||||| ||| | ||||| |||  | |||| || || || || || 
gtgagtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 12
------------------------------------------gtaagaaaagagacacttgaagttcgttgtttgtcacgcaaaagacagagtt----tctaattatatcgtctgt-tatatgacgaa--tctgaata--------tattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
                                          |   ||  ||    || | | | |       || ||   |||||| | |  |      |||  ||    ||| |  |||  | |||  | | || |        | |||| | ||   ||  ||||||| ||||||||||| ||||| ||||||||||| ||| | ||||| |||  | |||| || || || || || 
gtgagtccattctcactcctttgtcaagtaaaatccaatttggcttgaccagttg-accttaggataagcacatgccaatgaaaagaaaaaagtggaaaataaaaatgcaatctatacatactatgaagctttaaacaatgatcctttttttcccccctgatttagCCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
gtaagaaaagagacacttgaagttcgttgtttgtc-acgcaaaagacagagtttctaattatatcgtctgttatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
                 |   |  |  ||| || | ||    || ||     |  || || | |  |    |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| 
----------------gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
gtaagaaaagagacacttgaagttcgttgtttgtcacgcaaaagacagagtttctaattatatcgtctgt-tatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
                 |   |  |  ||| || |       |       | | | |||   | ||  |  |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || |||||||||||| || |||||||| ||||||| || ||||| ||||| 
----------------gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
gtaagaaaagagacacttgaagttcgttgtttgtc-acgcaaaagacagagtttctaattatatcgtctgttatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
                 |   |  |  ||| || | ||    ||  |     |  || || | |  |    |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || ||||||||| || ||||||||||| || |||| || ||||| ||||| 
----------------gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattatatcgtctgttatatgacgaatctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA
 ttctaat  putative branch site (score: 2)
                         aatctgaatatatttt  TA-rich tract