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gtaaatatcgcgacacgtaatacgtaatgatgattgcttttttacaatgttagattctgtctgatgtggttttttaacattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGAAGCCGTGTGAAAAATGTAACATCGA
species | Arabidopsis thaliana |
transcript | AT1G62290.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATCCCTCCACCTCGTGGACCTCTCTG GATACTTGGAGATGTGTTTATGGGAAA-TACCACACTGTCTTTGACTTCGGEST: gi|124829913|gb|EH914479.1|EH914479
genomic: TATCCCTCCACCTCGTGGACCTCTCTGgtaaatatcg ... cattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGG
EST: GATATCCCTCCACCTCGTGGACCTCTCTG GATACTTGGAGATGTGTTTATGGGAAA-TACCACACTGTCTTTGACTTCGGEST: gi|125117961|gb|EL166873.1|EL166873
genomic: GATATCCCTCCACCTCGTGGACCTCTCTGgtaaatatcg ... cattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGG
EST: ATTAGCGGCTTTACCGCACTTGATATCCCTCCACCTCGTGGACCTCTCTG GATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGA
genomic: ATTAGCGGCTTTACCGCACTTGATATCCCTCCACCTCGTGGACCTCTCTGgtaaatatcg ... cattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGG
attgcttttttacaatgttagattctgtctgatgtggttttttaacattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGAAGCCGTGTGAAAAATGTAACATCGA
ttttaac putative branch site (score: 2)
ttttttacaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcgcgacacgtaatacgtaatgatgattgcttttttacaatgttagattctgtctgatgtggttttttaacattggccagGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGAAGCCGTGTGAAAAATGTAACATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC