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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcggttcattacatcatattatctgtaatttttgtttatgttgtgattttttttcattactcgatagGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G60490.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------------------------------------------------gtatattcggttcattacat-catattatctgtaatttttgtttatgttgtgattttttt-----tcattactcgatagGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAG
                                                                                              ||  ||  | |     ||   |  || ||   || ||        ||   ||| ||   |     |      |   ||||||||||||||||| |  || |||||| || | |||||| ||||||||||||||||   |||||| || || |||||| ||||||||||||| || ||||
gtattcctaccaatccttcttctgtcaccctgttatgcatgcaaatgaatacctgtgtacatgtgtggattgatgcaccaaaaaccacgtgcctgtccatgtgctcacacacgcactcatgatggatatttagaagacgtgagttgaattacataaatgttggctttatgtagGTTGTTCAAATGGTATCACTAATGGATCGATTGCTTAAGTTGGAAAATCTTGATCTGCACCTAACACCATACAAGGTGCTAGCAACTGGACAAGATGAAG

upper sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------------------------------------------gtatattcggttcattacatcatattatctgtaatttttgtttat--gttgtga-ttttttttcatta---------ctcgatagGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAG
                                                                                        |  | | |   |  | |||       |    | ||   | ||||   |   ||| ||   || ||| |          |   ||||||||||||||||| |  || |||||| || | |||||| | |||||||||||||||  |||||| || || |||||| ||||||||||||| || ||||
gtattccaaccaatccttcttctgtcaccctgttatgcatgcaaatgaatacctgtacacatgtgcattgatgcaccgaaaaacacatgcctgtccatgtgctcacacacacacactcctgatggatatttagaagacatgagttcaattacataaatgttggtcttatgtagGTTGTTCAAATGGTATCACTAATGGATCGATTGCTTAAGTTAGAAAATCTTGATCTACACCTAACACCATACAAGGTGCTAGCAACTGGACAAGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411922|gb|EG454514.1|EG454514
EST:     GTTGCAAACTTATATTTAAGAAGGGAGATGATCTCCGGCAAGACCAACTG                         GTTGTTCAAATGGTTTGGCT
genomic: GTTGCAAACTTATATTTAAGAAGGGAGATGATCTCCGGCAAGACCAACTGgtatattcgg ... tactcgatagGTTGTTCAAATGGTTTGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatattatctgtaatttttgtttatgttgtgattttttttcattactcgatagGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAG
                                  ttttttttcattactc  CT-rich tract
             taatttttgtttatgt  TA-rich tract