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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatttgctaaatttatttcattcactttcaaaatatacttgtgaaaccaactcaatcttatacgtcagctacatcattctatcatgctctttttaatgttatgggactgtatgttccattgctgattctattagcttaatttttatcattatgctattgaacgcagATACATCACTAGTGATAATGTCGTGGAGTTGAAGGGTAAGGTTGCATGTGAAATCAGTAGTGCAGAAGAATTGACATTAACGGAGTTAATGTTCAGTGGT

Basic information

species Arabidopsis thaliana
transcript AT1G59760.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G59760.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 12
gtaaatatttgctaaatttatttcattcactttcaaaatatacttgtgaaaccaactcaatcttatacgtcagctacatcattctatc--atgctctttttaatgttatgggactgtatgttccattgctgattctattagcttaatttttatcattatgctattgaacgcagATACATCACTAGTGATAATGTCGTGGAGTTGAAGGGTAAGGTTGCATGTGAAATCAGTAGTGCAGAAGAATTGACATTAACGGAGTTAATGTTCAGTGGT
                                                            | |  ||  | | ||   | | | || |  |     | |||  |||||   || |  | |      || ||  || |   || |   | ||||          || |   ||| ||  |||| ||||| || || |||||||||||||| |||||||| ||||||||||||||||| || || |||||  | |||||| | ||||||| ||| 
------------------------------------------------------------tttcttat-taaactctcttaatttagctgaaaaattgtttgttgttaaatgattagaagaaatcatgatg--tcaacatgcctggatcttat----------tttacttcagGTATGTCACAAGTGACAACGTTGTGGAGTTGAAGGGGAAGGTTGCTTGTGAAATCAGTAGTGCGGATGAGTTGACTCTCACGGAGCTTATGTTCAATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccattgctgattctattagcttaatttttatcattatgctattgaacgcagATACATCACTAGTGATAATGTCGTGGAGTTGAAGGGTAAGGTTGCATGTGAAATCAGTAGTGCAGAAGAATTGACATTAACGGAGTTAATGTTCAGTGGT
             attctattagcttaat  TA-rich tract