Sequence
atgc intronic sequence ATGC exonic sequencegtaaattattcatagcttttctctgactttgttacatattctacttccatattttttttgggatcagcatcagaagctaacccattataagtatgtcttatgattttctgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCAC
Basic information
| species | Arabidopsis thaliana |
| transcript | AT1G57870.1 |
| intron # | 12 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G138676_T05 (Zea mays), 3'ss of exon 10
gtaaattattcatagcttttctctgactttgttacatattctacttccatattttttttgggatcagcatcagaagctaacccattataagtatgtcttatgattttctgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCAC
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-----------gtaaggccccatgcgcttt--tacgt-tcttgccactatctatctgggatgattccttgtgcaattttgttc-ttctaactaagga--gtgattcttcagT---TGGAGGCCTGTATGCACCCTTTCTTCGATGAGCTGAGAGACCCAAACACTCGTCTACCCAATGGTCGGCCTCTGCCGCCTCTCTTCAACTTCAGATCTC
upper sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 10
gtaaattattcatagcttttctctgactttgttacatattctacttccatattttttttgggatcagc--atcagaagctaacccattataagtatgtcttatgattttctgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCAC
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-----------gtaagtttaat---acttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTC
upper sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 10
--------------------------------------------------------gtaaattattcatagcttttctctgactttgttac-atattctacttccatattttttttgggatcagcatcagaagctaacc-cattataa-gtatgtcttatgattttc--tgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCAC
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gtgagtagcttcacttacagacagttgggtgcgttggattgtgatgtttgtgtggcgtttgcgaggcatgattttaaagcgagtttgcaacgacagcatatcgatgcagttgaatacgatactgcgttgcagatgattgacatgacgatattaagcaagtggttgttatttgcagCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCCGCCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116422944|gb|EG465536.1|EG465536EST: ATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAATTTGAGATGTACAGCG GTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCT
genomic: ATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAATTTGAGATGTACAGCGgtaaattatt ... tttctgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggatcagcatcagaagctaacccattataagtatgtcttatgattttctgatagGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCAC
agctaac putative branch site (score: 2)
ttttct putative PPT
attataagtat TA-rich tract
