Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctctgtctactgaggtgacctcaaattatctgaactggttaaccaaatcaactgacagctgtgtctttcagAAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G51710.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485386|gb|EG527978.1|EG527978
EST:     TTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAG                         AAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAG
genomic: TTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGgtttgctctg ... tgtctttcagAAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctcaaattatctgaactggttaaccaaatcaactgacagctgtgtctttcagAAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG
                                 aactgac  putative branch site (score: 2)
                                             tgtctttc  putative PPT
      aaattatct  TA-rich tract