1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgattatatacaccgaatccaaaccattgaatcaattcactttattattcgggattttgattttgtgtttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTGTTTCCAATAAATCCAGAGTTGCA
species | Arabidopsis thaliana |
transcript | AT1G48850.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAATGATTGCGCGTGGTCGTTCATGATCCTTGTGTTGTTCCACGAG CTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATEST: gi|125277803|gb|EL291888.1|EL291888
genomic: AAATGATTGCGCGTGGTCG-TCATGATCCTTGTGTTGTTCCACGAGgtgattatat ... ttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGAT
EST: GTGGTCGTCATGATCCTTGTGTTGTTCCACGAG CTGTGCCAATGGTGGAAGCAATGGTGGCTEST: gi|124993653|gb|EL065922.1|EL065922
genomic: GTGGTCGTCATGATCCTTGTGTTGTTCCACGAGgtgattatat ... ttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCT
EST: TTGTTCCACGAG CTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGA
genomic: TTGTTCCACGAGgtgattatat ... ttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGA
ccattgaatcaattcactttattattcgggattttgattttgtgtttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTGTTTCCAATAAATCCAGAGTTGCA
ttttgat putative branch site (score: 4)
tttgttt putative PPT
aattcactttattatt TA-rich tract