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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctcttcaaatacaaacgaatctggcagtcaaaatgttattgaattgtggtttgtggcagGTACCATTTGGCGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCA

Basic information

species Arabidopsis thaliana
transcript AT1G31070.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31070.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
------------------gtaagtttctcttcaaatacaaacgaatctggcagtcaa----------aatgtta--ttgaattgtggtttgtg---gcagGTACCATTTGGCGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCA
                   |   |   | ||||  || ||| |  ||    | ||||          ||| |||   |  | | ||| |||||   | || |||||| | || |||||||| ||  | || |   | ||||||||||||||| |||||||||| || || || |||||| | ||||| ||||| ||||||
tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaatacaaacgaatctggcagtcaaaatgttattgaattgtggtttgtggcagGTACCATTTGGCGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCA
                         aaaatgttattgaatt  TA-rich tract