1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaaacaataatgaagcaattagcacctgtgcagtgtagaaaatttgggagtatatgttgttgaagttgatcctttaattcttggtgtaaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCT
species | Arabidopsis thaliana |
transcript | AT1G23310.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125183443|gb|EL198397.1|EL198397
genomic: CGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTNAAATACGGTTACCAACGGGAEST: gi|125008534|gb|EL080803.1|EL080803
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGA
EST: ACAGATGGATTCTAACAGCTGC-AAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAEST: gi|124749301|gb|EH839431.1|EH839431
genomic: ACAGATGGATTC-AACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAA
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCEST: gi|124753843|gb|EH843973.1|EH843973
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTC
EST: GTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125196537|gb|EL211491.1|EL211491
genomic: GTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: CAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125019558|gb|EL091827.1|EL091827
genomic: CAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAEST: gi|125102903|gb|EL157496.1|EL157496
genomic: GGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAA
EST: TTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCEST: gi|125325840|gb|EL339920.1|EL339920
genomic: TTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCC
EST: CAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125104679|gb|EL158686.1|EL158686
genomic: CAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGEST: gi|124846043|gb|EH930480.1|EH930480
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGG
EST: AACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125093382|gb|EL150980.1|EL150980
genomic: AACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: ACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|86074135|gb|DR369892.1|DR369892
genomic: ACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124995068|gb|EL067337.1|EL067337
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124916695|gb|EH990569.1|EH990569
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: TGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTAACCAACGGGAGCTCTCCAAEST: gi|124823263|gb|EH908129.1|EH908129
genomic: TGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTA-CCAACGGGAGCTCTCCAA
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTEST: gi|124975104|gb|EL048622.1|EL048622
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCT
EST: AATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125114608|gb|EL164957.1|EL164957
genomic: AATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCEST: gi|86074126|gb|DR369883.1|DR369883
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACC
EST: ACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124911888|gb|EH985968.1|EH985968
genomic: ACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTT-CACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: ATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|86076020|gb|DR371777.1|DR371777
genomic: ATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125312593|gb|EL326678.1|EL326678
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGEST: gi|125234200|gb|EL248285.1|EL248285
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGG
EST: CGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124712895|gb|EH804297.1|EH804297
genomic: CGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCEST: gi|125107046|gb|EL160435.1|EL160435
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTC
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATEST: gi|116375796|gb|EG418388.1|EG418388
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTAT
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCGCAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|125230524|gb|EL244609.1|EL244609
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAEST: gi|86087902|gb|DR383661.1|DR383661
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGA
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124911855|gb|EH985935.1|EH985935
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: TGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124748848|gb|EH838978.1|EH838978
genomic: TGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGEST: gi|116375777|gb|EG418369.1|EG418369
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCGCAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGEST: gi|124901846|gb|EH975926.1|EH975926
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAG
EST: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATACGGEST: gi|124939657|gb|EL016181.1|EL016181
genomic: GACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATACGG
EST: ATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAG GTGCAATGTATTCGTTTCCTCAAATAACGGTTACCAACGGGAGCTCTCCAA
genomic: ATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGgtaaaacaat ... taaatgttagGTGCAATGTATTCGTTTCCTCAAATA-CGGTTACCAACGGGAGCTCTCCAA
atttgggagtatatgttgttgaagttgatcctttaattcttggtgtaaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCT
ctttaat putative branch site (score: 4)
tttaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacaataatgaagcaattagcacctgtgcagtgtagaaaatttgggagtatatgttgttgaagttgatcctttaattcttggtgtaaatgttagGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT