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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaaaagtagtttactttctcaataatattagatgtttgaaaatcttaattttcaatatttttcatagtgccttctccatcatttctttctagTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 12
-------------------------gtaggtaaaagtagtttactttctcaa----taatatta--gatgtttgaaaatcttaattttcaatatttt---tcatagtgccttctccatcatttctttctagTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT
                          ||  | | |||  ||||  || |  |    ||  || |  ||| |||| |  | ||  |    | |||||    ||||| |    | |   |   | || |  |||||||||| |||||     | || || || |||||  || ||||||| || || ||||| |||||||||||||| |||||||||||||||||||| || |
gtaaatttcaaatgatgagcctgacataaatcacagttttttatattattgactgctatgatcaacgatatttggagttgttgctaaatagtatttggaatcatacttgtctttttttttctcctcttcagTATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCT

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 12
-------------------------gtaggtaaaagtagtttactt-tctcaataa-tatta-gatgtttgaaaatcttaattttcaatatttttcatagtgcct---tctccatcatttctttct-----agTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT
                              | | |||  |||  || | | | | | |  || ||| |||| |  | ||  |    | |||||    |  | |||   |||   |  ||| |||||     |||||||||| |||||     | || ||  | |||||  || |||| || || || ||||| | |||||||||||| |||||||||||||||||||| || |
gtaaatttcaaatgatgaacctgacacgaatcacagttttttttttatgttattgactgctatgatctttggagttgttgctaaatattatttggagtcatacctaagtcttgtttttttttttctcgttcagTATGGAGTAGAATTTGTAGCTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCT

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 12
--------------------gtaggtaaaagtagtttactttctcaataatattag-atgtttgaaaatcttaattttcaatattt----ttcatagtgcct---tctccatcatttctttctagTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT
                    |  |||        |||   ||   | || |  ||| |||||  | |||||   || |    | ||     |||| || | |   |||| ||   |    |  |||||||  | |||||  || | || || || ||||| ||  | | ||| ||||||| ||| |||||||||||||| ||||||||||| || || || || |
gtacagtttccttcaatggagctggtgttcaagcttttagtttgtattattggtagtatgttaaagaatctcggttgtgtggaattacagctcattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaatcttaattttcaatatttttcatagtgccttctccatcatttctttctagTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT
     tcttaat  putative branch site (score: 3)
                              tgccttctccatcatt  putative PPT
     tcttaattttcaatat  TA-rich tract