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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgataatctatcgtgagtttcacattttacttaccttgaagctttcttctgtttagtaagagtcagtgtttgtggttccaatattcagGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCTATTGCATCTGTGCACCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G20410.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19800018|gb|AU231308.1|AU231308
EST:     AGAGTGCTTCACCGACG-AGTCCACTGGACCGTGAAAAGATTATACATTG                         GATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCTATTGCATCT
genomic: AGAGTGCTTCACCGACGAAGTCCACTGGACCGTGAAAAGATTATACATTGgttagtgata ... caatattcagGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCTATTGCATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgaagctttcttctgtttagtaagagtcagtgtttgtggttccaatattcagGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCTATTGCATCTGTGCACCCAG
                  tttagtaa  TA-rich tract