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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatatttgatacataatttctggattttagacagactattacactgtagcacttgctgtgatatactaaccatataattactgcatttcctcttgtggtgtagTTTTGCTGTTGCATTTTATGGCGGTACTACACCTCCGAGATTGGTTGCTCTTGTTGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G16970.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088447|gb|DR384206.1|DR384206
EST:     AGCACTCGTGCATTCATTACCTTGCATAGATCCATGATACAGCTTGAACG                         TTTTGCTGTTGCATTTTATGGCGGTACTACACCTCCGAGATTGGTTGCTCT
genomic: AGCACTCGTGCATTCATTGCCTTGCATAGATCCATGATACAGCTTGAACGgtaagcatat ... tgtggtgtagTTTTGCTGTTGCATTTTATGGCGGTACTACACCTCCGAGATTGGTTGCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacttgctgtgatatactaaccatataattactgcatttcctcttgtggtgtagTTTTGCTGTTGCATTTTATGGCGGTACTACACCTCCGAGATTGGTTGCTCTTGTTGCTCAG
               tactaac  putative branch site (score: 0)
                                ctgcatttcctctt  putative PPT
                  taaccatataatta  TA-rich tract