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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcttgttttcttctcttttgaaaagaccacgtgatcttattctctccttcattgttgaagtttatttggatcctattttttacagGGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGTACTCGGAACTGGACTTGCATTTGGATTTTTAGTG

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124820094|gb|EH904960.1|EH904960
EST:     CTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATG                         GGATTACTTGTCGTCCAAT
genomic: CTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATGgtaaagtctt ... ttttttacagGGATTACTTGTC-TCCAAT
EST: gi|124770974|gb|EH861104.1|EH861104
EST:     TAGCTATGCTGTATCCCTTCGTTGTCTTTACTTGGAGGAGTTTTGATATG                         GGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTG
genomic: TAGCTATGCTGTATCCCTTCGTTGTC-TTACTTGGAGGAGTTTTGATATGgtaaagtctt ... ttttttacagGGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTG
EST: gi|86070081|gb|DR365838.1|DR365838
EST:     CTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATG                         GGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGT
genomic: CTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATGgtaaagtctt ... ttttttacagGGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatcttattctctccttcattgttgaagtttatttggatcctattttttacagGGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGTACTCGGAACTGGACTTGCATTTGGATTTTTAGTG
                                        tcctatttttt  CT-rich tract
                                           tattttttaca  TA-rich tract