1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgctaccacaatatcacttggagaaatttcactcatccataattttgttgttttccttgagttgtggttaaaactgcgtgatttggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCTCTTTATTGTTTTATCGTTTTCTTTTGAAGTATTTTAGCATCTAGTTTGT
species | Arabidopsis thaliana |
transcript | AT1G09210.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCACCGCTCAT GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCTEST: gi|116412926|gb|EG455518.1|EG455518
genomic: CCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAATCTEST: gi|164232663|gb|ES108837.1|ES108837
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: CCAAATCAGAAGATAGCGAGG-AACCTCTGAGAAAGACGCCACCGCTCAT GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGEST: gi|86078431|gb|DR374188.1|DR374188
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAG
EST: CCAAATCAGAAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCTEST: gi|116412928|gb|EG455520.1|EG455520
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAATCT
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
taattttgttgttttccttgagttgtggttaaaactgcgtgatttggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCTCTTTATTGTTTTATCGTTTTCTTTTGAAGTATTTTAGCATCTAGTTTGT
ttaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctaccacaatatcacttggagaaatttcactcatccataattttgttgttttccttgagttgtggttaaaactgcgtgatttggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCTCTTTATTGTTTTATCGTTTTCTTTTGAAGTATTTTAGCATCTAGTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG