Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacatagttagttcaagcacaagaatatttcatgtgatcgttgctattccttgatttctggtacacttttttacatgtatcttggcaactgcagGCAGCAGAGTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGACGTACGCATTGCCGAGAAATCCTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G04200.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G00550.1 (Glycine max), 3'ss of exon 12
gtatgacatagttagttcaagcacaagaatatttcatgtgatcgttgctattcctt---gatttctgg---tacacttttttacatgtatcttggca-actgcagGCAGCAGAGTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGACGTACGCATTGCCGAGAAATCCTGAG
              |||   | | |||  | || |   ||   | | |||||  ||   || |||||    | |  |||| || |||||| ||       | ||| |||||||||||||||| | |||||| ||| |||| ||||| ||||| ||  ||||||||||| |||| || | | ||||   ||||||||||
--------------gtttgtg-ataagggttttgcgcttgtgtgattctattgattacagacttctgactattcctttttctaaatgtatattcttttgatacagTCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgctattccttgatttctggtacacttttttacatgtatcttggcaactgcagGCAGCAGAGTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGACGTACGCATTGCCGAGAAATCCTGAG
         ccttgat  putative branch site (score: 5)
                           ttttttacatgtat  TA-rich tract