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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTCGTGA

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 15
gtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaac--taacaaaaagagttccattgatttcagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTC-GTGA
                                                             | | ||         ||   |||      |||  || | ||   ||    |   | |  |   |    ||    || |||  | | ||  | |  |||||||||||||||||||||||||| ||| | ||| | || |||||||| |||||   ||| ||  | |||||||| |||   ||||| ||||| || ||  ||  
------------------------------------------------------------ttcttgagatttttacaactatttagtcaatgtgttaatgagcagctagcttctatctacataattgataattgatagcaactatattttgact--tttcagGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTCATTACGGGCACACTAGGACTCTTAATATGTGGCAAGACTATCTTGGTTTGTT-

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 19
gtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgattt-cagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTC-GTGA
                                                             | | ||        ||    |||      |||  || | ||   |     ||  | || ||   |   | |  ||| |      ||   ||  ||| ||||||||||||||||||||||| ||| | ||| | || ||||| || |||||  ||||  |  | |||||||| |||   || || ||||| || ||  ||  
------------------------------------------------------------ttcttgagatttttagatttatttagtcaatgtgttaatgagcaaccagcttt--tatctacataattgatagcaactatttttttttttttacttttcaggTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATCATGGGCGCACTAGGACTCTTAATATGCGGAAAGACTATCTTGGTTTGTTT

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 11
gtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagca-aactaacaaaaag-agttccattga--tttcagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTCGTGA
                                                               |  |  | ||   |   ||  |  | | | | | || |  | ||||    | |  |  |  |  | | || | |   |||| | ||    |||  |||||||| ||||||||||||||||| ||| | ||||| || ||||| || |||||    || || ||||||||||||||| | ||||| ||| |||| ||     
-------------------------------------------------------------cttcaacagcaagaaatggctgct--tcgagattt-gtgactttctgagcaagctagcttcaatctgtataattgatggaaagtaatttttgtgacttttcagGTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATTACAGGGACCTTGGGACTCTTGATATTTGGCAAGACTTTGTTGGTTACTT

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA03G01600.1 (Glycine max), 3'ss of exon 4
gtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaacctttt-acttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaag-agttccattga--tttcagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTCGTGA
                                                            | | ||   | || ||   ||||   | || ||   |  | ||      |  | | |   | |||||    || | |   |||| | ||    |||  |||||||||||||||||||||||||| ||| | ||| | || ||||| || |||||    ||  |  |||||||||||||| | ||||||||| |||| ||     
---------------------------------------------------------cttcaacagcaaggaatgggtgccttgagatttctgactttctgag----caagctagcttcaatctgtat---aattgatggaaagtaatttttgtgacttttcagGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGGCCCTGGGACTCTTGATATTTGGCAAAACTTTGTTGGTTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcagGTTGGAATGTCAATTGATCCGAAATTACTTCTCTCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAAACTATGTTAGTCGTGA
                                        ttccatt  CT-rich tract
                            taacaaaaa  TA-rich tract