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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttagctttgatcatcaaattgttatattttcagtattcaagtagcttacttcaacttttggtcctttggtcagAATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATTCTCGCTTCAGCATTTGAGAATTATAAATCACTTGCTGAACTGTCTTTCTCCGGGATGA

Basic information

species Arabidopsis thaliana
transcript AT5G65440.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116438832|gb|EG481424.1|EG481424
EST:     TCCCTATTATAATGACAGGCAACCACAGGGCTGTATTGAGTCATCAAGAG                         AATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATTCTCGCTTCA
genomic: TCCCTATTATAATGACAAGCAACCACAGGGCTGTATTGAGTCATCAAGAGgtgggttagc ... ctttggtcagAATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATTCTCGCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttatattttcagtattcaagtagcttacttcaacttttggtcctttggtcagAATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATTCTCGCTTCAGCATTTGAGAATTATAAATCACTTGCTGAACTGTCTTTCTCCGGGATGA
                        agcttac  putative branch site (score: 3)
                                           tccttt  putative PPT
     atattttcagtatt  TA-rich tract