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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccatcttttacttttatcaaaactcaaaaaaaaaaagttcaactgaacaagcttatgttgaacaaaatctgtcttgctaaacttcaatagGATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAG

Basic information

species Arabidopsis thaliana
transcript AT5G55400.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55400.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA02G46580.1 (Glycine max), 3'ss of exon 11
--------------------gttccatcttttacttttatcaaaactcaa-aaaaaaaaagttcaactgaacaagcttatgttgaacaaaatctgtcttgctaaacttcaatagGATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAG
                      |   | |||| || ||| |||  | ||| ||    ||| |  ||   ||  |  |   | |||  ||  | ||| |        ||  | |||| || ||  | || || ||| | || ||||| || |||||  | || |||||||| || ||||| || ||||| ||||||||||||||||||   |
gttttttccaaaataaattctctgttttttttgctgttaacaattcccaacaactgtaaactataaaataatgatttatcggtgacaaagttttgtatctaattttttgcacagGAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcaactgaacaagcttatgttgaacaaaatctgtcttgctaaacttcaatagGATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAG
                                       tgctaaa  putative branch site (score: 2)
                         aacaaaat  TA-rich tract