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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaacacacacaaaactctatttacttcaaataactgataagagaaaactgagtttgtttctcaattctggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAAATCATGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAGAGTTTCCT

Basic information

species Arabidopsis thaliana
transcript AT5G53850.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124937939|gb|EL014619.1|EL014619
EST:     AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAG                         GTCTGGAGGCG
genomic: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCG
EST: gi|124776431|gb|EH866558.1|EH866558
EST:     CAAGAAGCCGTAGCTGCAAAAGCCGCAG                         GTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCA
genomic: CAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCA
EST: gi|86088072|gb|DR383831.1|DR383831
EST:     AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAG                         GTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAA
genomic: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcaaataactgataagagaaaactgagtttgtttctcaattctggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAAATCATGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAGAGTTTCCT
     aaataact  TA-rich tract