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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaacacaactatgacttcctcatttactgttttagattaacttaaagcaaaatcctgatctatctttttactaaaacagATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGGAGAGAAGTAGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCTCTACCATATCCCTCATAT

Basic information

species Arabidopsis thaliana
transcript AT5G53120.4
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080625|gb|DR376382.1|DR376382
EST:     TAGACGGTGCGATGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGAT                         ATGCACAGAGCCGCATTTGCTTTGCCCACATTC-TGCGGAGAGAAGTAGCT
genomic: TAGACGGTGCGATGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGATgtaagtttaa ... actaaaacagATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGGAGAGAAGTAGCT
EST: gi|86079304|gb|DR375061.1|DR375061
EST:     TAGACGGTGCGATGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGAT                         ATGCACAGAGCCGCATTTGCTTTGCCCACATTC-TGCGGAGAGAAGTAGCT
genomic: TAGACGGTGCGATGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGATgtaagtttaa ... actaaaacagATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGGAGAGAAGTAGCT
EST: gi|164084181|gb|ES181698.1|ES181698
EST:     TAGACGGTGCGATGACCCATAAAAGAGAGTTGAAGTTCTATAACTCTGAT                         ATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGG
genomic: TAGACGGTGCGATGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGATgtaagtttaa ... actaaaacagATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgttttagattaacttaaagcaaaatcctgatctatctttttactaaaacagATGCACAGAGCCGCATTTGCTTTGCCCACATTCCTGCGGAGAGAAGTAGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCTCTACCATATCCCTCATAT
                                            tactaaa  putative branch site (score: 1)
                                  tctatctttttact  CT-rich tract
     ttttagattaacttaa  TA-rich tract