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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttattgcccctagcttttgttagtgttttattggggctaaagagttaactttgggtgaaacagAAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGTACACAGCCAATCTGGCGATCTCAATCGACACATAACATCCAAGTCCGCA

Basic information

species Arabidopsis thaliana
transcript AT5G52920.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125033155|gb|EL105424.1|EL105424
EST:     GCTTTGGCTACATTACTG                         AAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGT
genomic: GCTTTGGCTACATTACTGgtaaattttt ... ggtgaaacagAAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGT
EST: gi|164095102|gb|EL984174.1|EL984174
EST:     CTAATGCTTTGGCTACATTACTG                         AAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGT
genomic: CTAATGCTTTGGCTACATTACTGgtaaattttt ... ggtgaaacagAAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGT
EST: gi|125185098|gb|EL200052.1|EL200052
EST:     ACAGATGATGCAGAAGAAACTTTTGCTAATGCTTTGGCCACATTACTG                         AAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAA
genomic: ACAGATGATGCAGAAGAAACTTTTGCTAATGCTTTGGCTACATTACTGgtaaattttt ... ggtgaaacagAAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagcttttgttagtgttttattggggctaaagagttaactttgggtgaaacagAAACAAGGAATGGTGAAGAAGGGAGAGGAAATAGCAATCGTACAGAGCGGTACACAGCCAATCTGGCGATCTCAATCGACACATAACATCCAAGTCCGCA
                                  agttaac  putative branch site (score: 3)
               tgttttatt  TA-rich tract