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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactctacagctggtataatactctccggtgttatctttcgaaccgggcttgcgtgagtaacgaagaaagttttgaatttgacagGACAAGAGCTTATCCGATGGGGTATTTTTCTTGGAGCTGCTGAGTTCAGTGCAGCCAAGATCCGTAAACTGGAGTCTTGTTACAAACGGAGTTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G48460.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164091305|gb|ES095073.1|ES095073
EST:     ATGCTAAAGTGAGAAACAACGGATGCAAAACACGCATGTACAGTTTCAGG                         GACAAGAGCTTA
genomic: ATGCTAAAGTGAGAAACAACGGATGCAAAACACGCATGTACAGTTTCAGGgtaagtactc ... aatttgacagGACAAGAGCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatctttcgaaccgggcttgcgtgagtaacgaagaaagttttgaatttgacagGACAAGAGCTTATCCGATGGGGTATTTTTCTTGGAGCTGCTGAGTTCAGTGCAGCCAAGATCCGTAAACTGGAGTCTTGTTACAAACGGAGTTACAG
                         gagtaac  putative branch site (score: 2)
                                    aaagttttgaattt  TA-rich tract