Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacatctgtcttcttccttacataattgacaaaccattgtgatgcgtaatttttactaaactgacttttcacagGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCA

Basic information

species Arabidopsis thaliana
transcript AT5G48230.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084667|gb|DR380426.1|DR380426
EST:     GTTTGGAATCTTCTCAAGTTGATTACTATGAGATCAATGAAGCATTTGCA                         GTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCA
genomic: GTTTGGAATCTTCTCAAGTTGATTACTATGAGATCAATGAAGCATTTGCAgtaagaacat ... cttttcacagGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataattgacaaaccattgtgatgcgtaatttttactaaactgacttttcacagGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCA
                                             cttttcac  CT-rich tract
                           taatttttactaaact  TA-rich tract