Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttaattctatttttaacttaaagaggaaagaaagcgtcactgattttatagttaaggttactataaacgatctgtttctcatcttgcagTTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCGGTTAACCTTATTGAGCGCCTTTGCTCGTGGGATCCCTGCAATAGACCGA

Basic information

species Arabidopsis thaliana
transcript AT5G45430.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124921902|gb|EL000243.1|EL000243
EST:     TTACCAATTCCCTCAG                         TTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCG
genomic: TTACCAATTCCCTCAGgtatttttaa ... catcttgcagTTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCG
EST: gi|116391939|gb|EG434531.1|EG434531
EST:     GGTTGGAGGGGCTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAG                         TTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCG
genomic: GGTTGGAGGGGCTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGgtatttttaa ... catcttgcagTTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcactgattttatagttaaggttactataaacgatctgtttctcatcttgcagTTTCCCGGTGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCGGTTAACCTTATTGAGCGCCTTTGCTCGTGGGATCCCTGCAATAGACCGA
   cactgat  putative branch site (score: 3)
                                    tctgtttctcatctt  putative PPT
      tgattttatagttaa  TA-rich tract