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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcaggttgttctgatgttctttactttgctttgataatcactggactatcttgcatgatgactgttttttttttttcacgaactatcacagAAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 13
--------------------------gtaaagtcaggttg-ttctgatgttctttactttgctttgataa----------tcactggactatcttgcatga-tgactgttttttttttttcacgaact-atcacagAAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAG
                           |    |||  ||| || || | || ||| || ||| |   |            |||||     | ||||  |||   | ||  |  | |   |   |||||  | | ||||| |||||| ||  | |||||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||||
gttagcttcccaagaaggctggaaatttctgctcaacttgattttgctatttttttctgtgcatgtgtgcatgctttatttcacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatagAAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactggactatcttgcatgatgactgttttttttttttcacgaactatcacagAAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAG
                        actgtttttttttttt  TA-rich tract