1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgtcctgtactaatgaaccccaactgccatctcttgcccgttgtttaagtatataccaactcttttctcaatgcttcaattgtcggttttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAG
species | Arabidopsis thaliana |
transcript | AT5G26360.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG CATGACAAATGGTGAAAACGCATGGACTGGTATTEST: gi|125320116|gb|EL334201.1|EL334201
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATG-CAAATGGTGAAAACGCATGGACTGGTATT
EST: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACAEST: gi|164038953|gb|ES128096.1|ES128096
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACA
EST: CTATGACTGCATTGCAAGGGAAG CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAEST: gi|86059716|gb|DR355473.1|DR355473
genomic: CTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
EST: TGCATTGCAAGGGAAG CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAEST: gi|124802895|gb|EH891450.1|EH891450
genomic: TGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
EST: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTG
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTG
gtttaagtatataccaactcttttctcaatgcttcaattgtcggttttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAG
agtatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtcctgtactaatgaaccccaactgccatctcttgcccgttgtttaagtatataccaactcttttctcaatgcttcaattgtcggttttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG