1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtggatgctactcttctttagttgttctttatccatatcaatataacatatttatgatcagtcaatcattcaaaacgttcttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAATTACGAATTCTGCAACGGCTACACCGTCAGATTCGGACTTAGTTACGTT
species | Arabidopsis thaliana |
transcript | AT5G25980.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|116446271|gb|EG488863.1|EG488863
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|124986436|gb|EL058958.1|EL058958
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAEST: gi|124996292|gb|EL068561.1|EL068561
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAA-CGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGAEST: gi|116446304|gb|EG488896.1|EG488896
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGA
EST: CGGATTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|125058734|gb|EL127411.1|EL127411
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: GATTGATTATCTCTGCTAGTTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGEST: gi|125250547|gb|EL264632.1|EL264632
genomic: GATTGATTATCTCTGC-AG-TCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGG
EST: TTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|116446415|gb|EG489007.1|EG489007
genomic: TTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|116446282|gb|EG488874.1|EG488874
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|124859299|gb|EH943736.1|EH943736
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: TCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAEST: gi|116444210|gb|EG486802.1|EG486802
genomic: TCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|124955425|gb|EL030439.1|EL030439
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: GGATTGATTATCTCTGCAGTCATCTATTGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTEST: gi|116446426|gb|EG489018.1|EG489018
genomic: GGATTGATTATCTCTGCAGTCATCTA-TGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTT
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|116439131|gb|EG481723.1|EG481723
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATTTATGTTTTTTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTTTCTTGGGGATAAEST: gi|124911914|gb|EH985994.1|EH985994
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATEST: gi|116446293|gb|EG488885.1|EG488885
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGAT
EST: CGGATTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|124905911|gb|EH979991.1|EH979991
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAEST: gi|125127860|gb|EL172485.1|EL172485
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAA
EST: TTTTCTCCGNAAGGCCATCGA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAAEST: gi|116439047|gb|EG481639.1|EG481639
genomic: TTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
EST: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAA GGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
genomic: CGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAgtgagtggat ... ttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAA
tatcaatataacatatttatgatcagtcaatcattcaaaacgttcttgtttctagGGAGAAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAATTACGAATTCTGCAACGGCTACACCGTCAGATTCGGACTTAGTTACGTT
atataac putative branch site (score: 3)
ttcttgtttct putative PPT
atataacatatttatg TA-rich tract