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...gtgaaattatagttgcatgaagcaaaggatattagaaaataccagatttgtaagttttctgagcttcaaattgaaaaagggttactttgttgtattgcagGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGACCATACA
species | Arabidopsis thaliana |
transcript | AT5G19550.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGACCTCTGATGG GAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGAEST: gi|125003584|gb|EL075853.1|EL075853
genomic: TGACCTCTGATGGgtgagtcaac ... tgtattgcagGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGA
EST: CAAGTTGAATTCATGACCAAAGAGTTCCACATTTACATGACCTCTGATGG GAGAATAAGCATGG
genomic: CAAGTTGAATTCATGACCAAAGAGTTCCACATTTACATGACCTCTGATGGgtgagtcaac ... tgtattgcagGAGAATAAGCATGG
atttgtaagttttctgagcttcaaattgaaaaagggttactttgttgtattgcagGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGACCATACA
ctttgtt CT-rich tract
ttcaaattgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaattatagttgcatgaagcaaaggatattagaaaataccagatttgtaagttttctgagcttcaaattgaaaaagggttactttgttgtattgcagGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGACCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - -aatacca
- - - - - - - - - - - - - - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaag