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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttccttgtattattatagctttcttacggcggcaaacacataattattctcttacccataaaataggaagtatgcacctaattatttcttgtatattttagGTTGTTAATGACATCGGTATTCTGTCATCCACCGGAAAGGTAGCATCTTGCGACGGAACTATACATGTGTGGAATAGCCAAACCGGGAAACTAATATCTT

Basic information

species Arabidopsis thaliana
transcript AT5G18525.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18525.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv05s0020g00560.t01 (Vitis vinifera), 3'ss of exon 11
gttggttccttgtattattatagctttcttacggcggcaaacacataattattctcttacccataaaataggaa---gtatgcacctaattatttcttgtatattttagGTTGTTAATGACATCGGTATTCTGTCATCCACCGGAAAGGTAGCATCTTGCGACGGAACTATACATGTGTGGAATAGCCAAACCGGGAAACTAATATCTT
          |  |||| ||     || ||   |          | | |  ||   || |  ||  |||   |    || ||   ||||||  ||  || |   || ||||||| ||||| ||  | ||  ||||||| | ||||| |||||| ||||| || ||||| |||||| | |||||||||||||| || || ||||||    
---------ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttctaattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG

upper sequence: AT5G18525.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv05s0020g00030.t01 (Vitis vinifera), 3'ss of exon 11
gttggttccttgtattattatagctttcttacggcggcaaacacataattattctcttacccataaaataggaa---gtatgcacctaattatttcttgtatattttagGTTGTTAATGACATCGGTATTCTGTCATCCACCGGAAAGGTAGCATCTTGCGACGGAACTATACATGTGTGGAATAGCCAAACCGGGAAACTAATATCTT
          |  |||| ||     || ||   |          | | |  ||   || |  ||  |||   |    || ||   ||| ||  ||  || |   || ||||||| ||||| ||  | ||  ||||||| | ||||| |||||| ||||| || ||||| |||||| | |||||||||||||| || || ||||||    
---------ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttctatttgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttacccataaaataggaagtatgcacctaattatttcttgtatattttagGTTGTTAATGACATCGGTATTCTGTCATCCACCGGAAAGGTAGCATCTTGCGACGGAACTATACATGTGTGGAATAGCCAAACCGGGAAACTAATATCTT
                             acctaat  putative branch site (score: 3)
                                      tttcttgt  putative PPT
                                taattatttcttgtat  TA-rich tract