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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatataaatatatataactaaaaacactaatcaaagattctttttatacaagttggttctgattcactgcgttttttaaactaattctgctagTGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTACCGGCCATACTAATGCAGCAGACCAACATTTCATTAGCTTTGGCTTTGTC

Basic information

species Arabidopsis thaliana
transcript AT4G36960.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164176500|gb|ES061604.1|ES061604
EST:     AGGCATGAGCTTGGACGAT                         TGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTAC
genomic: AGGCATGAGCTTGGACGATgtgagtatat ... attctgctagTGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTAC
EST: gi|86084158|gb|DR379917.1|DR379917
EST:     GTCCTATGCGCGCATTTGGTCGAATGTATGGAGGCATGAGCTTGGACGAT                         TGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTAC
genomic: GTCCTATGCGCGCATTTGGTCGAATGTATGGAGGCATGAGCTTGGACGATgtgagtatat ... attctgctagTGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttatacaagttggttctgattcactgcgttttttaaactaattctgctagTGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTACCGGCCATACTAATGCAGCAGACCAACATTTCATTAGCTTTGGCTTTGTC
                                        aactaat  putative branch site (score: 2)
                                              ttctgct  CT-rich tract
                                 ttttttaaactaattc  TA-rich tract