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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattaccggcttcttctctgtttccgatgcctgaagtcaatgacaagcatcagaacaactgttaagaaaatatgatgtcccattcttttcctgtttttttcctcccatttgcagGTGATGCCCAGAATTGCAGTTCACCAGATGCAGTGAACAAAGTGAGGCAACATATGATAAAACACATCGACTTGTGGCTCTCTGAGTGTCGTGGATAGGT

Basic information

species Arabidopsis thaliana
transcript AT4G36190.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36190.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv04s0023g03020.t01 (Vitis vinifera), 3'ss of exon 11
gtatattaccggcttcttctctgtttccgatgcctgaagtcaatgacaagcatcagaacaactgttaagaaaatatgatgtcccattcttttcctgttttttt-cctcccatttgcagGTGATGCCCAGAATTGCAGTTCACCAGATGCAGTGAACAAAGTGAGGCAACATATGATAAAACACATCGACTTGTGGCTCTCTGAGTGTCGTGG-ATAGGT
                 | |    ||| ||    | | | ||| || |  | ||  |       | |     ||   |||    |||    |    | || || |||     || ||||||||||| |||| || || || || ||||||||  ||||||| |||||||| || ||| ||||||| ||| ||||||| ||  |||| |  |  | ||| 
-----------------tgtggcattctgacaaattatg-caaagatagccgtctcattgctcctcagtcccattctatgaatgattggacttacatcttcttgccttttggtttcagGTGATGCCAAGAACTGTAGCTCTCCTGATGCAGTTCACAAAGTTAGGCAACAGATCATAGAACACATAGACCTGTGGCTGTCCCAGTGCCAGGCCACAGG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124831141|gb|EH915580.1|EH915580
EST:     GCATGGAAGTGATCTTCGAGGATGCCCCCAATCTGCAATGGTCATTGAAG                         GTGATGCCCAGAATTGCAGTTCACCAGAT
genomic: GCATGGAAGTGATCTTCGAGGATGCCCCCAATCTGCAATGGTCATTGAAGgtatattacc ... ccatttgcagGTGATGCCCAGAATTGCAGTTCACCAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaagaaaatatgatgtcccattcttttcctgtttttttcctcccatttgcagGTGATGCCCAGAATTGCAGTTCACCAGATGCAGTGAACAAAGTGAGGCAACATATGATAAAACACATCGACTTGTGGCTCTCTGAGTGTCGTGGATAGGT
                tgtcccattcttttcc  CT-rich tract
       aaaatatgat  TA-rich tract