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gtaagacctccttcaatgctatctttatcttttcccctaaaacaaaagagaaagatgatatagtataagattgaaaagaaaatgtgttatggtattactacacttgcagtatcccatacaaaatatcattagtggtatgactccttaaattatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGACTTTAGGGTTAAAACCAAATACTATCACTTACTCTATGCTCATGCTGGC
species | Arabidopsis thaliana |
transcript | AT4G34830.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAACTTAGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGT GTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGAEST: gi|116478999|gb|EG521591.1|EG521591
genomic: CAAACTTAGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGTgtaagacctc ... ttatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGA
EST: CAAACTTAGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGT GTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGAEST: gi|116386371|gb|EG428963.1|EG428963
genomic: CAAACTTAGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGTgtaagacctc ... ttatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGA
EST: AGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGT GTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCT
genomic: AGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGTgtaagacctc ... ttatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCT
tgcagtatcccatacaaaatatcattagtggtatgactccttaaattatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGACTTTAGGGTTAAAACCAAATACTATCACTTACTCTATGCTCATGCTGGC
atacaaaatatcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacctccttcaatgctatctttatcttttcccctaaaacaaaagagaaagatgatatagtataagattgaaaagaaaatgtgttatggtattactacacttgcagtatcccatacaaaatatcattagtggtatgactccttaaattatcaacagGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGACTTTAGGGTTAAAACCAAATACTATCACTTACTCTATGCTCATGCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG