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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtcttttatttaatcccaaaagctgcattaaatcctctcactaagaaactggtcacaagcacctataactaatcttccaagtattctagaataggatgatattatcataatctttctttctggttgggtttctgctgaatcattgtgtctcttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164107397|gb|ES057705.1|ES057705
EST:     TGAAGCCGTTCAGAAACTCTGCAGAGACGACTAGGAGTTCTTCAAAACAG                         AAAATCTTATGTTAAT
genomic: TGAAGCCGTTCAGAAACTCTGCAGAGACG-CT-GGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAAT
EST: gi|164012955|gb|ES136870.1|ES136870
EST:     AGTTCTTCAAAACAG                         AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
genomic: AGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
EST: gi|86078637|gb|DR374394.1|DR374394
EST:     CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAG                         AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
genomic: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
EST: gi|125261539|gb|EL275624.1|EL275624
EST:     CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAG                         AAAATCTTATGTTAATGACAAAGGACAA
genomic: CTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAA
EST: gi|124827750|gb|EH912616.1|EH912616
EST:     AGTTCTTCAAAACAG                         AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
genomic: AGTTCTTCAAAACAGgtacagtctt ... ttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatctttctttctggttgggtttctgctgaatcattgtgtctcttcctttcagAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT
                                    ttgtgtctcttccttt  CT-rich tract
      tttcttt  TA-rich tract