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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgtttcataatttaatttcttgcatgagatgagattaatatccaaatatgttgtctaatatgaaaaggcatatctcttcagGCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGATATGGATGACTTGCCTTCTGCACGAGCTCTAGCTTATGACATGGTCTATAATGGGGTCGAG

Basic information

species Arabidopsis thaliana
transcript AT4G33760.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164042676|gb|ES097348.1|ES097348
EST:     TGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAG                         GCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGAT
genomic: TGACAGATTTCCCAATGTTCGAGTGGAATGAGCCAGAGCAGAGGCTTGAGgtatgtcgtt ... atctcttcagGCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgagattaatatccaaatatgttgtctaatatgaaaaggcatatctcttcagGCATTACATCATCCATTCACAGCTCCTAAGCCGGAAGATATGGATGACTTGCCTTCTGCACGAGCTCTAGCTTATGACATGGTCTATAATGGGGTCGAG
                          gtctaat  putative branch site (score: 3)
                                            tatctcttc  putative PPT
       attaatatccaaatat  TA-rich tract